I have a Bluesmirf Bluetooth module that has it’s pins in a different order than the one in the parts index. I tried to edit it to rearrange the pins, but it’s still wired up wrong in the schematic.
I can’t find any way to edit the connections in the part editor.
You can export the part then unzip it and manually edit the xml of the svg.
In the xml you need to find the correct connector id and swap the pin numbers.
I have a similar battle with a part i’m trying to create.
BTW do this with a clear mind, not late at night after a pizza + some wines.