OK this part should do what you need.
Pololu-A4988-fixed.fzpz (10.0 KB)
This is a new part cloned from the one in core parts and corrected to meet current standards and correct its various faults. You should be able to load this part then delete minus the old part and click and drag the wires to reconnect them. The new schematic meets the graphics standards and is quite a bit smaller as it should be:
Peter