Yeah drill.txt shows 0.007" holes.
Peter had that problem so he probably knows the fix - maybe because they are paths not circles -, but I would redraw a “circle” connector using the circle button, duplicate, snap them on the originals, and then delete the originals.
You also don’t need all those paths in copper1 if copper0 is inside copper1 and has everything. The bottom layer copper0 gets duplicated in copper1 if it’s inside it. You also don’t need that terminal5 as far as I can see.